CRAN . RSTUDIO . COM {
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Title:
CRAN: Package seqgendiff
Description:
Generates/modifies RNA-seq data for use in simulations. We provide a suite of functions that will add a known amount of signal to a real RNA-seq dataset. The advantage of using this approach over simulating under a theoretical distribution is that common/annoying aspects of the data are more preserved, giving a more realistic evaluation of your method. The main functions are select_counts(), thin_diff(), thin_lib(), thin_gene(), thin_2group(), thin_all(), and effective_cor(). See Gerard (2020) <<a href="https://doi.org/10.1186%2Fs12859-020-3450-9" target="_top">doi:10.1186/s12859-020-3450-9</a>> for details on the implemented methods.
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Keywords {🔍}
seqgendiff, rnaseq, data, gerard, seqgendifftgz, functions, seqgendiffzip, rrelease, roldrel, real, david, citation, binaries, arm, generationmodification, simulation, generatesmodifies, simulations, provide, suite, add, amount, signal, dataset, advantage, approach, simulating, theoretical, distribution, commonannoying, aspects, preserved, giving, realistic, evaluation, method, main, selectcounts, thindiff, thinlib, thingene, thingroup, thinall, effectivecor, dois, details, implemented, methods, version, imports,
Topics {✒️}
rna-seq generation/modification real rna-seq dataset /dcgerard/seqgendiff/issues license /dcgerard/seqgendiff needscompilation common/annoying aspects gz windows binaries seqgendiff results documentation seqgendiff archive linking omics cran checks zip macos binaries canonical form https org/package=seqgendiff main functions seqgendiff author theoretical distribution data realistic evaluation implemented methods clue suggests edger published cre] maintainer gpl-3 url readme news reference manual pdf vignettes package source r-devel r-release r-oldrel r-project functions seqgendiff gerard citation package 32614/cran https zip //cran simulations provide suite add amount signal advantage approach simulating preserved giving
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