CRAN . RSTUDIO . COM {
}
Title:
CRAN: Package net4pg
Description:
In shotgun proteomics, shared peptides (i.e., peptides that might originate from different proteins sharing homology, from different proteoforms due to alternative mRNA splicing, post-translational modifications, proteolytic cleavages, and/or allelic variants) represent a major source of ambiguity in protein identifications. The
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27 years and 1 months (reg. 1998-05-15).
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Keywords {🔍}
protein, identifications, netpg, ambiguity, package, ccs, graph, connected, proteins, netpgtgz, peptides, methods, components, filtering, fancello, netpgzip, rrelease, roldrel, handle, shotgun, proteomics, sharing, represent, source, implements, quantify, means, vertices, multiprotein, singleprotein, strategy, datasets, visually, inspect, exploit, transcript, transcriptome, burger, laura, aut, binaries, arm, shared, originate, homology, proteoforms, due, alternative, mrna, splicing,
Topics {✒️}
/laurafancello/net4pg/issues license sample-matched transcriptome graph connected components alternative mrna splicing post-translational modifications exploit transcriptome information gz windows binaries /laurafancello/net4pg needscompilation single protein vertex net4pg results documentation net4pg archive linking single-protein ccs multi-protein ccs enhance protein identifications omics cran checks zip macos binaries canonical form https multi-protein cc proteins sharing homology org/package=net4pg protein identifications graph theory matched transcriptomic net4pg author net4pg downloads proteins sharing 'net4pg' package shotgun proteomics proteoforms due proteolytic cleavages allelic variants major source main applications largest subgraphs large datasets visually inspect increasing availability proteomic datasets underlying assumption central dogma transparent method utils suggests ctb] maintainer gpl-3 url readme news reference manual pdf vignettes r-devel r-release r-oldrel
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