BOWTIE-BIO . SOURCEFORGE . NET {}

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Keywords {🔍}

bowtie, fixed, issue, colorspace, full, read, added, reads, genome, indexes, index, ucsc, sapiens, short, ncbi, major, causing, sam, output, support, preventing, threads, tbb, thread, sequences, release, alignment, related, snps, fasta, input, building, wrapper, caused, ultrafast, memoryefficient, human, tools, langmead, trapnell, salzberg, links, grch, removed, files, pthreads, inputs, license, option, scaling,

Topics {✒️}

major-allele-edited fastas nih grants r01-lm006845 added minor corrections/addition bowtie2-build --threads option memory-efficient alignment discovering splice junctions report incorrect results code related issue causing bowtie bowtie causing xm bowtie pre-built indexes short dna sequences superior thread scaling issue preventing bowtie incorrect alignment offsets sam optional field fixed minor issue memory footprint small parses input reads 1kgenomes major snps publications langmead migrated python scripts big-endian machines mistakenly combined elements open-source licenses magnitude throughput improvements compile bowtie source thread bowtie wrapper zip file integrity burrows-wheeler index parallell index building reporting repeated alignments single-base substitutions default threading library added install target suppressing unmapped reads gzipped-compressed fasta edited fasta files aligning fasta inputs consistently found tbb intel tbb threading paired-end reads added native support alternate haplotype assemblies rna-seq reads file contained queue-based lock pre-build binaries gzipped read files links

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