BIORXIV . ORG {
}
Title:
recount: A large-scale resource of analysis-ready RNA-seq expression data | bioRxiv
Description:
recount is a resource of processed and summarized expression data spanning nearly 60,000 human RNA-seq samples from the Sequence Read Archive (SRA). The associated recount Bio-conductor package provides a convenient API for querying, downloading, and analyzing the data. Each processed study consists of meta/phenotype data, the expression levels of genes and their underlying exons and splice junctions, and corresponding genomic annotation. We also provide data summarization types for quantifying novel transcribed sequence including base-resolution coverage and potentially unannotated splice junctions. We present workflows illustrating how to use recount to perform differential expression analysis including meta-analysis, annotation-free base-level analysis, and replication of smaller studies using data from larger studies. recount provides a valuable and user-friendly resource of processed RNA-seq datasets to draw additional biological insights from existing public data. The resource is available at <https://jhubiostatistics.shinyapps.io/recount/>.
Website Age:
12 years and 2 months (reg. 2013-04-08).
Matching Content Categories {📚}
- Education
- Science
- Careers
Content Management System {📝}
What CMS is biorxiv.org built with?
Website use Drupal 7 (http://drupal.org).
Traffic Estimate {📈}
What is the average monthly size of biorxiv.org audience?
💥 Very Strong Traffic: 200k - 500k visitors per month
Based on our best estimate, this website will receive around 250,019 visitors per month in the current month.
However, some sources were not loaded, we suggest to reload the page to get complete results.
check SE Ranking
check Ahrefs
check Similarweb
check Ubersuggest
check Semrush
How Does Biorxiv.org Make Money? {💸}
We're unsure if the website is profiting.
The purpose of some websites isn't monetary gain; they're meant to inform, educate, or foster collaboration. Everyone has unique reasons for building websites. This could be an example. Biorxiv.org could be getting rich in stealth mode, or the way it's monetizing isn't detectable.
Keywords {🔍}
biology, data, recount, resource, expression, medrxiv, subject, reviews, clinical, preprint, rnaseq, processed, biorxiv, university, trials, epidemiology, search, results, pdf, sequence, splice, junctions, including, analysis, studies, copyright, license, institute, technology, cancer, genomics, context, genetics, microbiology, papers, submitted, cookies, skip, main, content, homesubmitfaqblogalerts, rssresourcesaboutchannels, keyword, advanced, follow, largescale, analysisready, leonardo, colladotorres, abhinav,
Topics {✒️}
annotation-free base-level analysis epidemiology subject categories clinical trials processed rna-seq datasets recount bio-conductor package genetics microbiology biorxiv subject category epidemiology papers meta/phenotype data reviews sequence read archive author/funder keyword advanced search health-related information existing public data present workflows illustrating generous financial support chan zuckerberg initiative imperial college london vrije universiteit amsterdam articles animal behavior processed study consists large-scale resource context expression levels user-friendly resource splice junctions genomic annotation io/recount/ user experience preprint recount results follow abhinav nellore kai kammers ben langmead convenient api underlying exons smaller studies larger studies california institute massachusetts institute top previous posted august 08 report results continue find granted biorxiv data leek doi copyright holder
Social Networks {👍}(4)
- https://www.biorxiv.org/content/10.1101/068478v1/highwire_log/share/twitter?link=http%3A%2F%2Ftwitter.com%2Fshare%3Furl%3Dhttps%253A%2F%2Fwww.biorxiv.org%2Fcontent%2F10.1101%2F068478v1%26text%3Drecount%253A%2520A%2520large-scale%2520resource%2520of%2520analysis-ready%2520RNA-seq%2520expression%2520data
- https://www.biorxiv.org/content/10.1101/068478v1/highwire_log/share/facebook?link=http%3A%2F%2Fwww.facebook.com%2Fsharer.php%3Fu%3Dhttps%253A%2F%2Fwww.biorxiv.org%2Fcontent%2F10.1101%2F068478v1%26t%3Drecount%253A%2520A%2520large-scale%2520resource%2520of%2520analysis-ready%2520RNA-seq%2520expression%2520data
- https://www.biorxiv.org/content/10.1101/068478v1/highwire_log/share/linkedin?link=http%3A%2F%2Fwww.linkedin.com%2FshareArticle%3Fmini%3Dtrue%26url%3Dhttps%253A%2F%2Fwww.biorxiv.org%2Fcontent%2F10.1101%2F068478v1%26title%3Drecount%253A%2520A%2520large-scale%2520resource%2520of%2520analysis-ready%2520RNA-seq%2520expression%2520data%26summary%3D%26source%3DbioRxiv
- http://twitter.com/share?url=https%3A//www.biorxiv.org/content/10.1101/068478v1&count=horizontal&via=&text=recount%3A%20A%20large-scale%20resource%20of%20analysis-ready%20RNA-seq%20expression%20data&counturl=www.biorxiv.org/content/10.1101/068478v1
External Links {🔗}(5)
Analytics and Tracking {📊}
- Google Analytics
- Google Analytics 4
- Google Tag Manager
Libraries {📚}
- Clipboard.js
- jQuery
- Modernizr
Emails and Hosting {✉️}
Mail Servers:
- usb-smtp-inbound-1.mimecast.com
- usb-smtp-inbound-2.mimecast.com
Name Servers:
- jen.ns.cloudflare.com
- vin.ns.cloudflare.com
CDN Services {📦}
- Jsdelivr