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We are analyzing https://www.nature.com/articles/s41598-018-21584-7.

Title:
Insights into the inhibitory mechanisms of NADH on the αγ heterodimer of human NAD-dependent isocitrate dehydrogenase | Scientific Reports
Description:
Human NAD-dependent isocitrate dehydrogenase (NAD-IDH) catalyzes the oxidative decarboxylation of isocitrate in the citric acid cycle. In the α2βγ heterotetramer of NAD-IDH, the γ subunit plays the regulatory role and the β subunit the structural role. Previous biochemical data have shown that mammalian NAD-IDHs can be inhibited by NADH; however, the molecular mechanism is unclear. In this work, we show that the αβ, αγ and α2βγ enzymes of human NAD-IDH can be inhibited by NADH, and further determine the crystal structure of the αγ heterodimer bound with an Mg2+ and an NADH at the active site and an NADH at the allosteric site, which resembles that of the inactive αMgγ heterodimer. The NADH at the active site occupies the binding site for NAD+ and prevents the binding of the cofactor. The NADH at the allosteric site occupies the binding sites for ADP and citrate and blocks the binding of the activators. The biochemical data confirm that the NADH binding competes with the binding of NAD+ and the binding of citrate and ADP, and the two effects together contribute to the NADH inhibition on the activity. These findings provide insights into the inhibitory mechanisms of the αγ heterodimer by NADH.
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Keywords {🔍}

nadh, site, heterodimer, binding, nad, cit, structure, adp, allosteric, αβγ, data, article, human, pubmed, active, nadidh, activity, heterotetramer, αmgnadhγnadh, presence, isocitrate, google, scholar, subunits, activation, chain, cas, dehydrogenase, subunit, concentration, structural, enzyme, residues, side, fig, shown, inhibitory, biochemical, molecular, enzymes, effect, conditions, nature, bound, absence, studies, protein, interactions, mechanism, αmgγ,

Topics {✒️}

nature portfolio constructed pqlinkn-α-γ-tev-his6 plasmid privacy policy model-building tools nature advertising dpn-dependent isocitrate dehydrogenase x-ray diffraction data open blue boxes nad-dependent isocitrate dehydrogenase social media dpn-linked isocitrate dehydrogenase 4 mm isopropyl-β-d-thiogalactopyranoside reprints nad-specific isocitrate dehydrogenase human cytosolic nadp-idh cytosolic isocitrate dehydrogenase comprehensive python-based system human isocitrate dehydrogenase itc200 micro-calorimeter q6 isothermal titration calorimetry active αmgγmg+cit+adp heterodimer13 dimeric eukaryotic nadp-idhs17 homo sapien nad-idh danio rerio nad-idh c-terminal his6-tag acidithiobacillus thiooxidans nad-idh danio rerio nad-idhs mammalian nad-idh functions structure-based sequence alignment permissions human nad-idh measured human nad-idh analyzed isocitrate dehydrogenases thiooxidans nad-idh structure published maps author correspondence original author active αmgγmg+cit+adp heterodimer xenopus laevis nad-idh αmg+nadhγnadh heterodimer assumes αmgγmg+cit+adp structure13 isocitrate dehydrogenase c-terminal residues due full size image article liu references nichols 320 yue-yang road human nad-idh human dna fragments

Schema {🗺️}

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         description:Human NAD-dependent isocitrate dehydrogenase (NAD-IDH) catalyzes the oxidative decarboxylation of isocitrate in the citric acid cycle. In the α2βγ heterotetramer of NAD-IDH, the γ subunit plays the regulatory role and the β subunit the structural role. Previous biochemical data have shown that mammalian NAD-IDHs can be inhibited by NADH; however, the molecular mechanism is unclear. In this work, we show that the αβ, αγ and α2βγ enzymes of human NAD-IDH can be inhibited by NADH, and further determine the crystal structure of the αγ heterodimer bound with an Mg2+ and an NADH at the active site and an NADH at the allosteric site, which resembles that of the inactive αMgγ heterodimer. The NADH at the active site occupies the binding site for NAD+ and prevents the binding of the cofactor. The NADH at the allosteric site occupies the binding sites for ADP and citrate and blocks the binding of the activators. The biochemical data confirm that the NADH binding competes with the binding of NAD+ and the binding of citrate and ADP, and the two effects together contribute to the NADH inhibition on the activity. These findings provide insights into the inhibitory mechanisms of the αγ heterodimer by NADH.
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      headline:Insights into the inhibitory mechanisms of NADH on the αγ heterodimer of human NAD-dependent isocitrate dehydrogenase
      description:Human NAD-dependent isocitrate dehydrogenase (NAD-IDH) catalyzes the oxidative decarboxylation of isocitrate in the citric acid cycle. In the α2βγ heterotetramer of NAD-IDH, the γ subunit plays the regulatory role and the β subunit the structural role. Previous biochemical data have shown that mammalian NAD-IDHs can be inhibited by NADH; however, the molecular mechanism is unclear. In this work, we show that the αβ, αγ and α2βγ enzymes of human NAD-IDH can be inhibited by NADH, and further determine the crystal structure of the αγ heterodimer bound with an Mg2+ and an NADH at the active site and an NADH at the allosteric site, which resembles that of the inactive αMgγ heterodimer. The NADH at the active site occupies the binding site for NAD+ and prevents the binding of the cofactor. The NADH at the allosteric site occupies the binding sites for ADP and citrate and blocks the binding of the activators. The biochemical data confirm that the NADH binding competes with the binding of NAD+ and the binding of citrate and ADP, and the two effects together contribute to the NADH inhibition on the activity. These findings provide insights into the inhibitory mechanisms of the αγ heterodimer by NADH.
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