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nature portfolio privacy policy high-coverage single-cell rna-sequencing voltage-sensitive calcium-dependent manner advertising single-cell rna-seq data single-cell rna-sequencing data effective solutions thermo scientific single-cell rna-seq survey social media single-cell rna-seq analysis reprints single-cell mrna quantification single-nucleus rna sequencing single-cell rna-seq dig-rna labeling mix middle developing stages high-throughput sequencing data inhibits amyloid-beta deposition bulk rna-seq analysis nature 433 nature 508 nature 535 nature 541 nature 478 nature 555 nature 505 nature 503 nature 472 nature obtain 1 ng/μl cdna quiescent/post-mitotic state pc1 positive direction digoxigenin-labeled rna probes 2 mg/ml collagenase iv high-dimensional expression space 150-bp paired-end reads added nuclease-free water single-cell collection procedure important calcium-binding proteins developing pre-frontal cortex26 fate-restricted neural progenitors permissions subsequent t-sne plots spatial transcriptomic survey pre-central cortex t-sne map showing rna polymerase ii single-cell transcriptome analysis

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      headline:Spatial transcriptomic survey of human embryonic cerebral cortex by single-cell RNA-seq analysis
      description:The cellular complexity of human brain development has been intensively investigated, although a regional characterization of the entire human cerebral cortex based on single-cell transcriptome analysis has not been reported. Here, we performed RNA-seq on over 4,000 individual cells from 22 brain regions of human mid-gestation embryos. We identified 29 cell sub-clusters, which showed different proportions in each region and the pons showed especially high percentage of astrocytes. Embryonic neurons were not as diverse as adult neurons, although they possessed important features of their destinies in adults. Neuron development was unsynchronized in the cerebral cortex, as dorsal regions appeared to be more mature than ventral regions at this stage. Region-specific genes were comprehensively identified in each neuronal sub-cluster, and a large proportion of these genes were neural disease related. Our results present a systematic landscape of the regionalized gene expression and neuron maturation of the human cerebral cortex.
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      name:Beijing Key Laboratory of Reproductive Endocrinology and Assisted Reproductive Technology, Beijing, China
      name:Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China
      name:Beijing Advanced Innovation Center for Genomics, Department of Obstetrics and Gynecology, College of Life Sciences, Third Hospital, Peking University, Beijing, China
      name:Biomedical Institute for Pioneering Investigation via Convergence and Center for Reproductive Medicine, Ministry of Education Key Laboratory of Cell Proliferation and Differentiation, Beijing, China
      name:Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China

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