
SAMTOOLS . SOURCEFORGE . NET {
}
Title:
Multisample SNP Calling
Description:
No description found...
Website Age:
25 years and 10 months (reg. 1999-08-08).
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Custom-built
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Keywords {đ}
samtools, bcftools, base, read, format, view, calling, sum, file, samples, vcf, indel, bases, nonref, command, reference, reffa, data, baq, information, line, bcf, afs, alignment, indels, mpileup, snp, sample, variant, list, call, snps, reads, ref, qualities, allele, pchi, lines, phredscaled, tail, distance, pvalue, files, alnbam, genotype, mapping, quality, strand, frequency, field,
Topics {âď¸}
�   echo samtools mpileup -c50 -m3 -f0 net/projects/samtools/files/tabix/tabix-0 cp sort $home/bin/sort-alt pl varfilter -10 -20 -30 -40 -a4 -g90 -s30 run samtools calmd -abr aln bcf  bcftools view -cgp cond2 cond net/svnroot/samtools/trunk/samtools afs  bcftools view -cgp round2 net/download/asub  wget http cp tabix bgzip $home/bin gz  bcftools view -bl target afs  bcftools view -cgp round1 pl $home/bin  wget http bz2/download  tar -jxf tabix-0 pl  cp asub bedutils pl varfilter -w0 -10 -20 -30 -40 -q0 cp samtools bcftools/{bcftools bcftools view -gm target bcftools view -nibl cond gz  tabix -fpvcf merge bcf  bcftools view var minus phred-scaled probability gz  sort-alt -k1 samtools mpileup -uf ref count low-quality bases bz2  tar -jxf sort-20101217 phred-scaled pchi2 rp site-independent snp callers net/download/sort-20101217 phred-scaled data likelihoods bcf  bcftools index merge net/download/bedutils read equals min{k-1 time-demanding baq calculation aattaagtctacagagcaacta read3 echo grep ^part-{} pl} $home/bin cases snp/indel calling source code package multi-allelic indels procedure calling snps/indels multi-sequence realignment phred-scaled probability samtools/bcftools versions bcftools view -cg retrieve target regions xargs tabix merge sample names starting low-quality bases
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