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Computational Gene Annotation in New Genome Assemblies Using GeneID | SpringerLink
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The sequence of many eukaryotic genomes is nowadays available from a personal computer to any researcher in the world-wide scientific community. However, the sequences are worthless without the adequate annotation of the biological meaningful elements. The annotation...
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ScholarlyArticle:
headline:Computational Gene Annotation in New Genome Assemblies Using GeneID
pageEnd:261
pageStart:243
image:https://media.springernature.com/w153/springer-static/cover/book/978-1-59745-251-9.jpg
genre:
Springer Protocols
isPartOf:
name:Bioinformatics for DNA Sequence Analysis
isbn:
978-1-59745-251-9
978-1-58829-910-9
type:Book
publisher:
name:Humana Press
logo:
url:https://www.springernature.com/app-sn/public/images/logo-springernature.png
type:ImageObject
type:Organization
author:
name:Enrique Blanco
affiliation:
name:Universitat de Barcelona
address:
name:Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain
type:PostalAddress
type:Organization
type:Person
name:Josep F. Abril
affiliation:
name:Universitat de Barcelona
address:
name:Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain
type:PostalAddress
type:Organization
type:Person
keywords:Gene finding, gene, protein, genome, exon, intron, sequence alignment, annotation pipeline
description:The sequence of many eukaryotic genomes is nowadays available from a personal computer to any researcher in the world-wide scientific community. However, the sequences are worthless without the adequate annotation of the biological meaningful elements. The annotation of the genes, in particular, is a challenging task that can not be tackled without the aid of specific bioinformatics tools. We present in this chapter a simple protocol mainly based on the combination of the program GeneID and other computational tools to annotate the location of a gene, which was previously annotated in D. melanogaster, in the recently assembled genome of D. yakuba.
datePublished:2009
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