We are analyzing https://link.springer.com/chapter/10.1007/978-3-319-28549-8_8.

Title:
Segmenting and Tracking Multiple Dividing Targets Using ilastik | SpringerLink
Description:
Tracking crowded cells or other targets in biology is often a challenging task due to poor signal-to-noise ratio, mutual occlusion, large displacements, little discernibility, and the ability of cells to divide. We here present an open source implementation of...
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Keywords {🔍}

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Topics {✒️}

live-cell time-lapse sequences de//benchmarks/document/drosophila_cell_tracking/ multiview light-sheet microscope real-time surveillance video globally-optimal greedy algorithms cellnetworks excellence cluster/ectop month download article/chapter stable multi-target tracking high-throughput quantitative analysis robust single-particle tracking bio-image informatics intelligent cluster index privacy choices/manage cookies extended reproducible research open-source platform cell tracking algorithms de/node/382 benfold open source implementation open source software partial financial support multiple hypothesis tracking reliable cell tracking automated cell tracking multi-object tracking quantifying cell phenotypes construct cell lineages european economic area device instant download image analysis software biological-image analysis challenging task due false positive detections olivo-marin jc phase-contrast videos java software based nav res logist probabilistic graphical models konstanz information miner author information authors editor information editors conditions privacy policy sc/trackmate padfield global data association ieee international symposium accepting optional cookies download page http ieee international conference ullrich koethe & fred ilastik software framework main content log

Schema {🗺️}

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      headline:Segmenting and Tracking Multiple Dividing Targets Using ilastik
      pageEnd:229
      pageStart:199
      image:https://media.springernature.com/w153/springer-static/cover/book/978-3-319-28549-8.jpg
      genre:
         Medicine
         Medicine (R0)
      isPartOf:
         name:Focus on Bio-Image Informatics
         isbn:
            978-3-319-28549-8
            978-3-319-28547-4
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      publisher:
         name:Springer International Publishing
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      author:
            name:Carsten Haubold
            affiliation:
                  name:University of Heidelberg, IWR/HCI
                  address:
                     name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Martin Schiegg
            affiliation:
                  name:University of Heidelberg, IWR/HCI
                  address:
                     name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Anna Kreshuk
            affiliation:
                  name:University of Heidelberg, IWR/HCI
                  address:
                     name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Stuart Berg
            affiliation:
                  name:Howard Hughes Medical Institute
                  address:
                     name:Howard Hughes Medical Institute, Ashburn, USA
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Ullrich Koethe
            affiliation:
                  name:University of Heidelberg, IWR/HCI
                  address:
                     name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
                     type:PostalAddress
                  type:Organization
            type:Person
            name:Fred A. Hamprecht
            affiliation:
                  name:University of Heidelberg, IWR/HCI
                  address:
                     name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
                     type:PostalAddress
                  type:Organization
            email:[email protected]
            type:Person
      keywords:Tracking Algorithm, Tracking Result, Division Classifier, Tracking Optimization, Probable Configuration
      description:Tracking crowded cells or other targets in biology is often a challenging task due to poor signal-to-noise ratio, mutual occlusion, large displacements, little discernibility, and the ability of cells to divide. We here present an open source implementation of conservation tracking (Schiegg et al., IEEE international conference on computer vision (ICCV). IEEE, New York, pp 2928–2935, 2013) in the ilastik software framework. This robust tracking-by-assignment algorithm explicitly makes allowance for false positive detections, undersegmentation, and cell division. We give an overview over the underlying algorithm and parameters, and explain the use for a light sheet microscopy sequence of a Drosophila embryo. Equipped with this knowledge, users will be able to track targets of interest in their own data.
      datePublished:2016
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      address:
         name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
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            address:
               name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
               type:PostalAddress
            type:Organization
      name:Martin Schiegg
      affiliation:
            name:University of Heidelberg, IWR/HCI
            address:
               name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
               type:PostalAddress
            type:Organization
      name:Anna Kreshuk
      affiliation:
            name:University of Heidelberg, IWR/HCI
            address:
               name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
               type:PostalAddress
            type:Organization
      name:Stuart Berg
      affiliation:
            name:Howard Hughes Medical Institute
            address:
               name:Howard Hughes Medical Institute, Ashburn, USA
               type:PostalAddress
            type:Organization
      name:Ullrich Koethe
      affiliation:
            name:University of Heidelberg, IWR/HCI
            address:
               name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
               type:PostalAddress
            type:Organization
      name:Fred A. Hamprecht
      affiliation:
            name:University of Heidelberg, IWR/HCI
            address:
               name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
               type:PostalAddress
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      name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
      name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
      name:Howard Hughes Medical Institute, Ashburn, USA
      name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
      name:University of Heidelberg, IWR/HCI, Heidelberg, Germany
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