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Title:
Integrating biological data – the Distributed Annotation System | BMC Bioinformatics
Description:
Background The Distributed Annotation System (DAS) is a widely adopted protocol for dynamically integrating a wide range of biological data from geographically diverse sources. DAS continues to expand its applicability and evolve in response to new challenges facing integrative bioinformatics. Results Here we describe the various infrastructure components of DAS and present a new extended version of the DAS specification. Version 1.53E incorporates several recent developments, including its extension to serve new data types and an ontology for protein features. Conclusion Our extensions to the DAS protocol have facilitated the integration of new data types, and our improvements to the existing DAS infrastructure have addressed recent challenges. The steadily increasing numbers of available data sources demonstrates further adoption of the DAS protocol.
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Keywords {🔍}
data, sources, source, sequence, protein, features, command, article, annotation, client, ontology, integration, clients, commands, bioinformatics, specification, annotations, implemented, system, protocol, types, google, scholar, pubmed, biological, distributed, project, structure, coordinate, extended, server, xml, feature, interaction, integrating, version, display, genome, systems, entities, interactions, number, extensions, resources, ensembl, reference, servers, alignments, bmc, open,
Topics {✒️}
post-translational modification terms domain-domain interaction datasets sanger institute maintains article number s3 hyper-text transfer protocol java web-start application tim jp hubbard grant number lshg-ct-2003-503265 article download pdf das source provider dasmiweb portal[http distributed annotation system mydas server library privacy choices/manage cookies extensible markup language data integration methods org/servers/ldas spanish national center issue=s8 server-side filtering integrating biological data 1093/nar/gkl818 flicek biological research data provider data integration platform volume map data //search centralised databases pdb databases sharing proteomics data post-genomics era user-driven contexts org/documents/spec bmc bioinformatics 2001 bmc bioinformatics 2007 bmc bioinformatics 9 biomed central org/dasobert/] finn gene ontology projects central registry offer greater coverage biological data types open source libraries das registration server glyph types european economic area hagen blankenburg highly collaborative approaches increasingly important focus necessarily mutually exclusive
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headline:Integrating biological data – the Distributed Annotation System
description:The Distributed Annotation System (DAS) is a widely adopted protocol for dynamically integrating a wide range of biological data from geographically diverse sources. DAS continues to expand its applicability and evolve in response to new challenges facing integrative bioinformatics. Here we describe the various infrastructure components of DAS and present a new extended version of the DAS specification. Version 1.53E incorporates several recent developments, including its extension to serve new data types and an ontology for protein features. Our extensions to the DAS protocol have facilitated the integration of new data types, and our improvements to the existing DAS infrastructure have addressed recent challenges. The steadily increasing numbers of available data sources demonstrates further adoption of the DAS protocol.
datePublished:2008-07-22T00:00:00Z
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headline:Integrating biological data – the Distributed Annotation System
description:The Distributed Annotation System (DAS) is a widely adopted protocol for dynamically integrating a wide range of biological data from geographically diverse sources. DAS continues to expand its applicability and evolve in response to new challenges facing integrative bioinformatics. Here we describe the various infrastructure components of DAS and present a new extended version of the DAS specification. Version 1.53E incorporates several recent developments, including its extension to serve new data types and an ontology for protein features. Our extensions to the DAS protocol have facilitated the integration of new data types, and our improvements to the existing DAS infrastructure have addressed recent challenges. The steadily increasing numbers of available data sources demonstrates further adoption of the DAS protocol.
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Data Provider
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Distribute Annotation System
Source Command
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Microarrays
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Computer Appl. in Life Sciences
Algorithms
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