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         headline:The fecal virome of red-crowned cranes
         description:The red-crowned crane is one of the rarest crane species, and its population is decreasing due to loss of habitat, poisoning, and infections. Using a viral metagenomics approach, we analyzed the virome of feces from wild and captive red-crowned cranes, which were pooled separately. Vertebrate viruses belonging to the families Picornaviridae, Parvoviridae, Circoviridae, and Caliciviridae were detected. Among the members of the family Picornaviridae, we found three that appear to represent new genera. Six nearly complete genomes from members of the family Parvoviridae were also obtained, including four new members of the proposed genus “Chapparvovirus”, and two members of the genus Aveparvovirus. Six small circular DNA genomes were also characterized. One nearly complete genome showing a low level of sequence identity to caliciviruses was also characterized. Numerous viruses believed to infect insects, plants, and crustaceans were also identified, which were probably derived from the diet of red-crowned cranes. This study increases our understanding of the enteric virome of red-crowned cranes and provides a baseline for comparison to those of other birds or following disease outbreaks.
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      description:The red-crowned crane is one of the rarest crane species, and its population is decreasing due to loss of habitat, poisoning, and infections. Using a viral metagenomics approach, we analyzed the virome of feces from wild and captive red-crowned cranes, which were pooled separately. Vertebrate viruses belonging to the families Picornaviridae, Parvoviridae, Circoviridae, and Caliciviridae were detected. Among the members of the family Picornaviridae, we found three that appear to represent new genera. Six nearly complete genomes from members of the family Parvoviridae were also obtained, including four new members of the proposed genus “Chapparvovirus”, and two members of the genus Aveparvovirus. Six small circular DNA genomes were also characterized. One nearly complete genome showing a low level of sequence identity to caliciviruses was also characterized. Numerous viruses believed to infect insects, plants, and crustaceans were also identified, which were probably derived from the diet of red-crowned cranes. This study increases our understanding of the enteric virome of red-crowned cranes and provides a baseline for comparison to those of other birds or following disease outbreaks.
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               name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
               type:PostalAddress
            type:Organization
      name:Qianben Song
      affiliation:
            name:Jiangsu University
            address:
               name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
               type:PostalAddress
            type:Organization
      name:Xutao Deng
      affiliation:
            name:University of California San Francisco
            address:
               name:Blood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, USA
               type:PostalAddress
            type:Organization
      name:Dunwu Qi
      affiliation:
            name:Chengdu Research Base of Giant Panda Breeding
            address:
               name:Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu Research Base of Giant Panda Breeding, Chengdu, People’s Republic of China
               type:PostalAddress
            type:Organization
      name:Wen Zhang
      affiliation:
            name:Jiangsu University
            address:
               name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
               type:PostalAddress
            type:Organization
      email:[email protected]
      name:Eric Delwart
      affiliation:
            name:University of California San Francisco
            address:
               name:Blood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, USA
               type:PostalAddress
            type:Organization
PostalAddress:
      name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
      name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
      name:College of Biology and the Environment, Nanjing Forestry Police College, Nanjing, People’s Republic of China
      name:Department of Medical Laboratory Testing, Jiangsu Taizhou People’s Hospital, Taizhou, People’s Republic of China
      name:Department of Medical Laboratory Testing, Jiangsu Taizhou People’s Hospital, Taizhou, People’s Republic of China
      name:School of Basic Medical Sciences, Ningxia Medical University, Yinchuan, People’s Republic of China
      name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
      name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
      name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
      name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
      name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
      name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
      name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
      name:Blood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, USA
      name:Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu Research Base of Giant Panda Breeding, Chengdu, People’s Republic of China
      name:School of Medicine, Jiangsu University, Zhenjiang, People’s Republic of China
      name:Blood Systems Research Institute, Department of Laboratory Medicine, University of California San Francisco, San Francisco, USA
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