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Evolution and Diversification of RNA Silencing Proteins in Fungi | Journal of Molecular Evolution
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Comprehensive phylogenetic analyses of fungal Argonaute, Dicer, and RNA-dependent RNA polymerase-like proteins have been performed to gain insights into the diversification of RNA silencing pathways during the evolution of fungi. A wide range of fungi including ascomycetes, basidiomycetyes, and zygomycetes possesses multiple RNA silencing components in the genome, whereas a portion of ascomycete and basidiomycete fungi apparently lacks the whole or most of the components. The number of paralogous silencing proteins in the genome differs considerably among fungal species, suggesting that RNA silencing pathways have diversified significantly during evolution in parallel with developing the complexity of life cycle or in response to environmental conditions. Interestingly, orthologous silencing proteins from different fungal clades are often clustered more closely than paralogous proteins in a fungus, indicating that duplication events occurred before speciation events. Therefore, the origin of multiple RNA silencing pathways seems to be very ancient, likely having occurred prior to the divergence of the major fungal lineages.
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article, google, scholar, cas, pubmed, rna, silencing, fungal, gene, cell, fungi, genes, mol, proteins, evolution, nakayashiki, interference, mayama, pathways, genome, fungus, access, macino, neurospora, nature, sequence, privacy, cookies, content, journal, search, kadotani, dicer, rnadependent, rnai, genetics, protein, cogoni, posttranscriptional, crassa, biol, plant, microbiol, information, publish, argonaute, multiple, res, aramayo, meiotic,
Topics {✒️}
month download article/chapter rna-dependent rna polymerase rna-dependent rna polymerase naoki kadotani & shigeyuki mayama rna-dependent rna polymerases rna-directed rna polymerases post-transcriptional gene silencing position-specific gap penalties sirna/mirna silencing pathways major fungal lineages full article pdf double-stranded rna posttranscriptional gene silencing rna silencing pathways privacy choices/manage cookies related sirna accumulation double-stranded rnase molecular evolution aims fungal clades fungal argonaute related subjects small interfering rnas small antisense rnas rna silencing proteins fungi including ascomycetes mobile silencing signal apple scab fungus lee dw multigene sequence analyses functionally linked genes lineage–specific loss fungal tree specific genetic interference rnai–mediated pathways european economic area nucleic acids res chimeric inverted repeats pyricularia populations isolated ruiz-vazquez rm histoplasma capsulatum demonstrates providing helpful comments orthologous silencing proteins fungal species genome differs considerably cambridge university press �saccharomyces complex’ determined article journal paralogous silencing proteins author information authors conditions privacy policy
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- Fungal RNA editing: who, when, and why?
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headline:Evolution and Diversification of RNA Silencing Proteins in Fungi
description:Comprehensive phylogenetic analyses of fungal Argonaute, Dicer, and RNA-dependent RNA polymerase-like proteins have been performed to gain insights into the diversification of RNA silencing pathways during the evolution of fungi. A wide range of fungi including ascomycetes, basidiomycetyes, and zygomycetes possesses multiple RNA silencing components in the genome, whereas a portion of ascomycete and basidiomycete fungi apparently lacks the whole or most of the components. The number of paralogous silencing proteins in the genome differs considerably among fungal species, suggesting that RNA silencing pathways have diversified significantly during evolution in parallel with developing the complexity of life cycle or in response to environmental conditions. Interestingly, orthologous silencing proteins from different fungal clades are often clustered more closely than paralogous proteins in a fungus, indicating that duplication events occurred before speciation events. Therefore, the origin of multiple RNA silencing pathways seems to be very ancient, likely having occurred prior to the divergence of the major fungal lineages.
datePublished:2006-06-16T00:00:00Z
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RNA silencing
RNA interference (RNAi)
Dicer
Argonaute
RNA-dependent RNA polymerase
Fungi
Evolutionary Biology
Microbiology
Plant Sciences
Plant Genetics and Genomics
Animal Genetics and Genomics
Cell Biology
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headline:Evolution and Diversification of RNA Silencing Proteins in Fungi
description:Comprehensive phylogenetic analyses of fungal Argonaute, Dicer, and RNA-dependent RNA polymerase-like proteins have been performed to gain insights into the diversification of RNA silencing pathways during the evolution of fungi. A wide range of fungi including ascomycetes, basidiomycetyes, and zygomycetes possesses multiple RNA silencing components in the genome, whereas a portion of ascomycete and basidiomycete fungi apparently lacks the whole or most of the components. The number of paralogous silencing proteins in the genome differs considerably among fungal species, suggesting that RNA silencing pathways have diversified significantly during evolution in parallel with developing the complexity of life cycle or in response to environmental conditions. Interestingly, orthologous silencing proteins from different fungal clades are often clustered more closely than paralogous proteins in a fungus, indicating that duplication events occurred before speciation events. Therefore, the origin of multiple RNA silencing pathways seems to be very ancient, likely having occurred prior to the divergence of the major fungal lineages.
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RNA interference (RNAi)
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Fungi
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