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Exonucleases and the incorporation of aranucleotides into DNA | Cell Biochemistry and Biophysics
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The polymerization of nucleotide analogs into DNA is a common strategy used to inhibit DNA synthesis in rapidly dividing tumor cells and viruses. The mammalian DNA polymerases catalyze the insertion of the arabinofuranosyl analogs of dNTPs (aranucleotides) into DNA efficiently, but elongate from the 3′ aranucleotides poorly. Slow elongation provides an opportunity for exonucleases to remove aranucleotides. The exonuclease activity associated with DNA polymerase δ removes araCMP from 3′ termini with the same efficiency that it removes a paired 3′ deoxycytosine suggesting that the proofreading exonucleases associated with DNA polymerases might remove aranucleotides inefficiently. A separate 30 kDa exonuclease has been purified from mammalian cells that removes araCMP from 3′ termini. The activity of this enzyme in the cell could remove aranucleotides from 3′ termini of DNA and decrease the efficacy of the analogs. Inhibition analysis of the purified exonuclease shows that this enzyme is inhibited by thioinosine monophosphate (TIMP) with aK i=17 μM. When high TIMP levels are generated in HL-60 cells, incorporation of araC in DNA is increased about 16-fold relative to total DNA synthesis. This increased araC in DNA is likely a result of exonuclease inhibition in the cell. Thus, exonucleases in cells might play an important role in removing aranucleotides inserted by DNA polymerases.
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dna, google, scholar, cas, article, pubmed, incorporation, exonuclease, biol, human, chem, aranucleotides, perrino, cell, synthesis, cells, access, replication, pharmacol, kufe, privacy, cookies, content, exonucleases, mammalian, polymerases, activity, inhibition, monophosphate, arac, egan, publish, search, analogs, remove, polymerase, removes, termini, proofreading, repair, enzymes, usa, effects, res, major, analysis, data, information, log, journal,
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anticancer nucleoside arabinosylcytosine month download article/chapter polymerase η–promoted resistance ph-step alkaline elution human dna polymerase-ε anti-neoplastic agent arabinosylcytosine related subjects mismatch repair pre-steady state methods polyacrylamide gel electrophoresis 1-β-d-arabinofuranosyladenosine triphosphate 1-β-d-arabinofuranosycytosine incorporation inhibit dna synthesis total dna synthesis full article pdf distinct enzymes nucleolytic enzymes dna polymerase-β human dna polymerase privacy choices/manage cookies 1-β-d-arabinofuranosylcytosine incorporation nucleotide analogs dna replication fidelity deoxyribonucleic acid synthesis dna polymerases alpha dna polymerase iii specific dna sequences fludarabine-terminated dna article cell biochemistry ε incorporate fialuridine 1-β-d-arabinofuranosylcytosine dna synthesis human myeloblasts correlates human β-polymerases european economic area hydrogen bonding revisited intracellular pharmacodynamic studies excision human neoplastic cells mammalian tumor cells-1 check access instant access conditions privacy policy dna replication van der marel restrained molecular dynamics cytosine arabinoside monophosphate human leukemia cells human leukemic cells accepting optional cookies
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headline:Exonucleases and the incorporation of aranucleotides into DNA
description:The polymerization of nucleotide analogs into DNA is a common strategy used to inhibit DNA synthesis in rapidly dividing tumor cells and viruses. The mammalian DNA polymerases catalyze the insertion of the arabinofuranosyl analogs of dNTPs (aranucleotides) into DNA efficiently, but elongate from the 3′ aranucleotides poorly. Slow elongation provides an opportunity for exonucleases to remove aranucleotides. The exonuclease activity associated with DNA polymerase δ removes araCMP from 3′ termini with the same efficiency that it removes a paired 3′ deoxycytosine suggesting that the proofreading exonucleases associated with DNA polymerases might remove aranucleotides inefficiently. A separate 30 kDa exonuclease has been purified from mammalian cells that removes araCMP from 3′ termini. The activity of this enzyme in the cell could remove aranucleotides from 3′ termini of DNA and decrease the efficacy of the analogs. Inhibition analysis of the purified exonuclease shows that this enzyme is inhibited by thioinosine monophosphate (TIMP) with aK
i=17 μM. When high TIMP levels are generated in HL-60 cells, incorporation of araC in DNA is increased about 16-fold relative to total DNA synthesis. This increased araC in DNA is likely a result of exonuclease inhibition in the cell. Thus, exonucleases in cells might play an important role in removing aranucleotides inserted by DNA polymerases.
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description:The polymerization of nucleotide analogs into DNA is a common strategy used to inhibit DNA synthesis in rapidly dividing tumor cells and viruses. The mammalian DNA polymerases catalyze the insertion of the arabinofuranosyl analogs of dNTPs (aranucleotides) into DNA efficiently, but elongate from the 3′ aranucleotides poorly. Slow elongation provides an opportunity for exonucleases to remove aranucleotides. The exonuclease activity associated with DNA polymerase δ removes araCMP from 3′ termini with the same efficiency that it removes a paired 3′ deoxycytosine suggesting that the proofreading exonucleases associated with DNA polymerases might remove aranucleotides inefficiently. A separate 30 kDa exonuclease has been purified from mammalian cells that removes araCMP from 3′ termini. The activity of this enzyme in the cell could remove aranucleotides from 3′ termini of DNA and decrease the efficacy of the analogs. Inhibition analysis of the purified exonuclease shows that this enzyme is inhibited by thioinosine monophosphate (TIMP) with aK
i=17 μM. When high TIMP levels are generated in HL-60 cells, incorporation of araC in DNA is increased about 16-fold relative to total DNA synthesis. This increased araC in DNA is likely a result of exonuclease inhibition in the cell. Thus, exonucleases in cells might play an important role in removing aranucleotides inserted by DNA polymerases.
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