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BMCBIOINFORMATICS . BIOMEDCENTRAL . COM {}

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  4. Monthly Traffic Estimate
  5. How Does Bmcbioinformatics.biomedcentral.com Make Money
  6. How Much Does Bmcbioinformatics.biomedcentral.com Make
  7. Keywords
  8. Topics
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  10. Social Networks
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  12. Analytics And Tracking
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We are analyzing https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-129.

Title:
RNAstructure: software for RNA secondary structure prediction and analysis | BMC Bioinformatics | Full Text
Description:
Background To understand an RNA sequence
Website Age:
25 years and 10 months (reg. 1999-08-06).

Matching Content Categories {📚}

  • Education
  • Books & Literature
  • Science

Content Management System {📝}

What CMS is bmcbioinformatics.biomedcentral.com built with?

Custom-built

No common CMS systems were detected on Bmcbioinformatics.biomedcentral.com, and no known web development framework was identified.

Traffic Estimate {📈}

What is the average monthly size of bmcbioinformatics.biomedcentral.com audience?

🚀 Good Traffic: 50k - 100k visitors per month


Based on our best estimate, this website will receive around 53,076 visitors per month in the current month.

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How Does Bmcbioinformatics.biomedcentral.com Make Money? {💸}


Display Ads {🎯}


The website utilizes display ads within its content to generate revenue. Check the next section for further revenue estimates.

Ads are managed by yourbow.com. Particular relationships are as follows:

Direct Advertisers (3)
yourbow.com, google.com, doceree.com

How Much Does Bmcbioinformatics.biomedcentral.com Make? {💰}


Display Ads {🎯}

$730 per month
According to our algorithms, Bmcbioinformatics.biomedcentral.com's monthly online income from display advertising ranges from $488 to $1,342.

Keywords {🔍}

pubmed, article, google, scholar, structure, rna, cas, prediction, secondary, central, dna, mathews, sequence, parameters, rnastructure, structures, energy, nucleic, thermodynamic, sequences, biochemistry, acids, res, free, class, thermodynamics, java, interfaces, stability, text, gui, bmc, turner, base, windows, analysis, bioinformatics, nar, bia, authors, library, algorithms, interface, figure, data, package, methods, classes, pairs, lowest,

Topics {✒️}

t-a-t-t-a-a-t-a-t-c-a-a-g-t-t c-a-a-c-t-t-g-a-t-a-t-t-a-a-t springer nature conclusions rnastructure allawi ht nearest-neighbor energy parameters expanded nearest-neighbor model single base-pair mismatches project home page author information authors linux/unix shared libraries unix/linux text-based interfaces java-based graphical interface compensating base pair background multi-helix junction loops single-sequence structure prediction authors scientific editing base pair probabilities cold spring harbor received increasing attention gc base pair privacy choices/manage cookies unix-style text interfaces nearest neighbor rules secondary structure prediction free energy change user-friendly interface nearest neighbor parameters free energy minimization free-energy minimization rna/dna hybrid duplexes secondary structure common havgaard jh authors’ original file interface functions cross-platform moody em rnastructure code download small interfering rnas van boom jh nearest-neighbor thermodynamics biomed central rna secondary structure implementation implementation page rdm unusually stable rna dna-rna hybridization parameters bimolecular structure prediction base-base mismatches

Schema {🗺️}

WebPage:
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         headline:RNAstructure: software for RNA secondary structure prediction and analysis
         description:To understand an RNA sequence's mechanism of action, the structure must be known. Furthermore, target RNA structure is an important consideration in the design of small interfering RNAs and antisense DNA oligonucleotides. RNA secondary structure prediction, using thermodynamics, can be used to develop hypotheses about the structure of an RNA sequence. RNAstructure is a software package for RNA secondary structure prediction and analysis. It uses thermodynamics and utilizes the most recent set of nearest neighbor parameters from the Turner group. It includes methods for secondary structure prediction (using several algorithms), prediction of base pair probabilities, bimolecular structure prediction, and prediction of a structure common to two sequences. This contribution describes new extensions to the package, including a library of C++ classes for incorporation into other programs, a user-friendly graphical user interface written in JAVA, and new Unix-style text interfaces. The original graphical user interface for Microsoft Windows is still maintained. The extensions to RNAstructure serve to make RNA secondary structure prediction user-friendly. The package is available for download from the Mathews lab homepage at http://rna.urmc.rochester.edu/RNAstructure.html .
         datePublished:2010-03-15T00:00:00Z
         dateModified:2010-03-15T00:00:00Z
         pageStart:1
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            Secondary Structure Prediction
            Class Library
            Neighbor Parameter
            Base Pair Probability
            Bioinformatics
            Microarrays
            Computational Biology/Bioinformatics
            Computer Appl. in Life Sciences
            Algorithms
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ScholarlyArticle:
      headline:RNAstructure: software for RNA secondary structure prediction and analysis
      description:To understand an RNA sequence's mechanism of action, the structure must be known. Furthermore, target RNA structure is an important consideration in the design of small interfering RNAs and antisense DNA oligonucleotides. RNA secondary structure prediction, using thermodynamics, can be used to develop hypotheses about the structure of an RNA sequence. RNAstructure is a software package for RNA secondary structure prediction and analysis. It uses thermodynamics and utilizes the most recent set of nearest neighbor parameters from the Turner group. It includes methods for secondary structure prediction (using several algorithms), prediction of base pair probabilities, bimolecular structure prediction, and prediction of a structure common to two sequences. This contribution describes new extensions to the package, including a library of C++ classes for incorporation into other programs, a user-friendly graphical user interface written in JAVA, and new Unix-style text interfaces. The original graphical user interface for Microsoft Windows is still maintained. The extensions to RNAstructure serve to make RNA secondary structure prediction user-friendly. The package is available for download from the Mathews lab homepage at http://rna.urmc.rochester.edu/RNAstructure.html .
      datePublished:2010-03-15T00:00:00Z
      dateModified:2010-03-15T00:00:00Z
      pageStart:1
      pageEnd:9
      license:http://creativecommons.org/licenses/by/2.0
      sameAs:https://doi.org/10.1186/1471-2105-11-129
      keywords:
         Structure Prediction
         Secondary Structure Prediction
         Class Library
         Neighbor Parameter
         Base Pair Probability
         Bioinformatics
         Microarrays
         Computational Biology/Bioinformatics
         Computer Appl. in Life Sciences
         Algorithms
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            name:Jessica S Reuter
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                     name:Department of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, USA
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            name:David H Mathews
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         name:Department of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, USA
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               name:Department of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, USA
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      name:David H Mathews
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      name:Department of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, USA
      name:Department of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, USA

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External Links {🔗}(347)

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